PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0160s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 167aa    MW: 18367.7 Da    PI: 8.0665
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0160s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.58.1e-37381302103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+y++++d++++ ++sws+ +nsfvv+++ ef +++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkk
  Kaladp0160s0001.1.p  38 FLCKTYDMVDDPSTDAVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHSNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGKK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++ikr+k +
  Kaladp0160s0001.1.p 119 HLLNTIKRRKAS 130
                          *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3633127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.4E-3934127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-6234127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3238127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSNGADGGIS GTCRAESTQS VPAPVPVPMP NPNAPPPFLC KTYDMVDDPS TDAVVSWSSG  60
NNSFVVWNPP EFGRDLLPKY FKHSNFSSFV RQLNTYGFRK VHPDRWEFAN EGFLRGKKHL  120
LNTIKRRKAS QAPTQPQLEQ SQVQSPAATA CVEVGKFGLE EEVEKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-292913011123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512502.11e-75PREDICTED: heat shock factor protein HSF8
RefseqXP_004512503.11e-75PREDICTED: heat shock factor protein HSF8
RefseqXP_007040659.12e-75Heat shock transcription factor A1D isoform 1
RefseqXP_007040660.12e-75Heat shock transcription factor A1D isoform 1
SwissprotQ9LQM72e-69HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A061G5S92e-75A0A061G5S9_THECC; Heat shock transcription factor A1D isoform 1
STRINGGLYMA16G13400.11e-74(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.18e-64heat shock transcription factor A1D